scRNA-seq 火山图
简介
scRNA-seq火山图是多个cluster(vs 其他cluster)的并排火山图。X轴是细胞类型;Y轴是log2FC,越大越向上下两侧。注:这里没有体现p值。调用scRNAtoolVis R包。注:这个图有个bug,标注的基因名指向的点会不存在。非bug版(但样式少)请使用
单细胞火山图模块
数据说明
输入数据为7列:p_val avg_log2FC pct.1 pct.2 p_val_adj cluster gene
论文例子
A Spatiotemporal Organ-Wide Gene Expression and Cell Atlas of the Developing Human Heart
如何引用?
建议直接写网址。助力发表5500+篇
(google学术),4600+篇
(知网)
正式引用:Tang D, Chen M, Huang X, Zhang G, Zeng L, Zhang G, Wu S, Wang Y.
SRplot: A free online platform for data visualization and graphing. PLoS One. 2023 Nov 9;18(11):e0294236. doi: 10.1371/journal.pone.0294236. PMID: 37943830.
方法章节:Heatmap was plotted by https://www.bioinformatics.com.cn (last accessed on 10 Dec 2024), an online platform for data analysis and visualization.
致谢章节:We thank Mingjie Chen (Shanghai NewCore Biotechnology Co., Ltd.) for providing data analysis and visualization support.