Read before use
1, check data with precheck (windows version) tools
2, data from excel, copy and paste data into the input frame
3, data from txt, must tab-seperated, copy and paste data into the input frame
4, specieal and non-English characters such as #, <, >, %, (, ), α are not friendly
5, use point as decimal separator, not comma. e.g. 3.14, not 3,14 as pi
TCGA cancer types
ACC (Adrenocortical carcinoma)
BLCA (Bladder Urothelial Carcinoma)
BRCA (Breast invasive carcinoma)
CESC (Cervical squamous cell carcinoma and endocervical adenocarcinoma)
CHOL (Cholangiocarcinoma)
COAD (Colon adenocarcinoma)
DLBC (Lymphoid Neoplasm Diffuse Large B-cell Lymphoma)
ESCA (Esophageal carcinoma)
GBM (Glioblastoma multiforme)
HNSC (Head and Neck squamous cell carcinoma)
KICH (Kidney Chromophobe)
KIRC (Kidney renal clear cell carcinoma)
KIRP (Kidney renal papillary cell carcinoma)
LAML (Acute Myeloid Leukemia)
LGG (Brain Lower Grade Glioma)
LIHC (Liver hepatocellular carcinoma)
LUAD (Lung adenocarcinoma)
LUSC (Lung squamous cell carcinoma)
MESO (Mesothelioma)
OV (Ovarian serous cystadenocarcinoma)
PAAD (Pancreatic adenocarcinoma)
PCPG (Pheochromocytoma and Paraganglioma)
PRAD (Prostate adenocarcinoma)
READ (Rectum adenocarcinoma)
SARC (Sarcoma)
SKCM (Skin Cutaneous Melanoma)
STAD (Stomach adenocarcinoma)
TGCT (Testicular Germ Cell Tumors)
THCA (Thyroid carcinoma)
THYM (Thymoma)
UCEC (Uterine Corpus Endometrial Carcinoma)
UCS (Uterine Carcinosarcoma)
UVM (Uveal Melanoma)

Default gene number

Specific genes (one gene symbol per line)

Figure size
figure width:
figure height:

Fontfamily


MAF oncoplot

Introduction
Oncoplot for mutations, data from TCGA MAF files. ref: maftools R package
Input data
build-in 33 types of cancers from TCGA (TCGA.*.mutect*somatic.maf.gz)
Paper example
Input choose cancer type
Output

1) How to plot?
1, Put data in excel according to the example format.
2, Copy and paste into input frame.
3, Input pre-checking button to check input
4, After checking pass, select parameters, submit and download

2) How to cite?
3000+ papers in (Google Scholar)
Tang D, Chen M, Huang X, Zhang G, Zeng L, Zhang G, Wu S, Wang Y. SRplot: A free online platform for data visualization and graphing. PLoS One. 2023 Nov 9;18(11):e0294236. doi: 10.1371/journal.pone.0294236. PMID: 37943830.

3) FAQs