Note: input data format must match the example on the right, tab-seperated
1, data from excel, copy and paste data into the input frame
2, data from txt, must tab-seperated, copy and paste data into the input frame
3, use point as decimal separator, not comma. e.g. 3.14, not 3,14 as pi

TCGA cancer types
ACC (Adrenocortical carcinoma)
BLCA (Bladder Urothelial Carcinoma)
BRCA (Breast invasive carcinoma)
CESC (Cervical squamous cell carcinoma and endocervical adenocarcinoma)
CHOL (Cholangiocarcinoma)
COAD (Colon adenocarcinoma)
DLBC (Lymphoid Neoplasm Diffuse Large B-cell Lymphoma)
ESCA (Esophageal carcinoma)
GBM (Glioblastoma multiforme)
HNSC (Head and Neck squamous cell carcinoma)
KICH (Kidney Chromophobe)
KIRC (Kidney renal clear cell carcinoma)
KIRP (Kidney renal papillary cell carcinoma)
LAML (Acute Myeloid Leukemia)
LGG (Brain Lower Grade Glioma)
LIHC (Liver hepatocellular carcinoma)
LUAD (Lung adenocarcinoma)
LUSC (Lung squamous cell carcinoma)
MESO (Mesothelioma)
OV (Ovarian serous cystadenocarcinoma)
PAAD (Pancreatic adenocarcinoma)
PCPG (Pheochromocytoma and Paraganglioma)
PRAD (Prostate adenocarcinoma)
READ (Rectum adenocarcinoma)
SARC (Sarcoma)
SKCM (Skin Cutaneous Melanoma)
STAD (Stomach adenocarcinoma)
TGCT (Testicular Germ Cell Tumors)
THCA (Thyroid carcinoma)
THYM (Thymoma)
UCEC (Uterine Corpus Endometrial Carcinoma)
UCS (Uterine Carcinosarcoma)
UVM (Uveal Melanoma)

Default gene number

Specific genes (one gene symbol per line)

Figure size
figure width:
figure height:

Fontfamily


MAF oncoplot

Introduction
Oncoplot for mutations, data from TCGA MAF files. ref: maftools R package
Input data
build-in 33 types of cancers from TCGA (TCGA.*.mutect*somatic.maf.gz)
Examples from papers
Input choose cancer type
Output

1) How to plot?
1, Prepare data
2, Open with excel, and change into the same format as the example
3, Copy and paste data into the input frame
4, Select parameters
5, Submit and download figure files

2) Why NO figure generated?
Script need strigent input format, please read the instructions and examples carefully.

3) How to cite?
2000+ papers in (Google Scholar)
Tang D, Chen M, Huang X, Zhang G, Zeng L, Zhang G, Wu S, Wang Y. SRplot: A free online platform for data visualization and graphing. PLoS One. 2023 Nov 9;18(11):e0294236. doi: 10.1371/journal.pone.0294236. PMID: 37943830.

4) FAQs