sankey + dot plot
Introduction
Left part is sankey plot, represents genes within each pathway; right part is dot plot, dot sizes represent gene numbers, dot colors represent p/FDR values.
Input data instructions
Input data must contain 5 columns: the first column is pathway name, the second column is gene ratio, the third column is p/FDR, the fourth column is genes (seperate with /), the fifth column is gene count. No more than 100 genes or pathways
Examples from papers
Network-based identification of key master regulators associated with an immune-silent cancer phenotype. fig 7.
[Nature Communication] Kir2.1-mediated membrane potential promotes nutrient acquisition and inflammation through regulation of nutrient transporters. fig 1i
1) How to plot?
1, Prepare data
2, Open with excel, and change into the same format as the example
3, Copy and paste data into the input frame
4, Select parameters
5, Submit and download figure files
2) Why NO figure generated?
Script need strigent input format, please read the instructions and examples carefully.
3) How to cite?
2000+ papers in (Google Scholar)
Tang D, Chen M, Huang X, Zhang G, Zeng L, Zhang G, Wu S, Wang Y. SRplot: A free online platform for data visualization and graphing. PLoS One. 2023 Nov 9;18(11):e0294236. doi: 10.1371/journal.pone.0294236. PMID: 37943830.
4) FAQs