Genomic regions (peaks) overlap venn diagram
Introduction
Using venn diagram to show the overlapped genomic numbers. Please contact us for more than 6 datasets.
Input data instructions
If ignore strand, input data must contain 3 columns (bed3 format): chromsome, start, end
If consider strand, input data must contain 6 columns (bed6 format): chromosome, start, end, name, value, strand
Output contains sets results. For example, if a.bed and b.bed to overlap, then a.bed specific is 10_a.bed. b.bed specific is 01_b.bed. Overlap is 11_a_b.bed. Since it exists many-to-many results, the number in venn often not the same to the original bed lines.
Paper example
Intervene: a tool for intersection and visualization of multiple gene or genomic region sets Fig 2A.
Input |
chr1 30 50
chr2 30 50 |
Output |
|
1) How to plot?
1, Put data in excel according to the example format.
2, Copy and paste into input frame.
3, Input pre-checking button to check input
4, After checking pass, select parameters, submit and download
2) How to cite?
4000+ papers in (Google Scholar)
Tang D, Chen M, Huang X, Zhang G, Zeng L, Zhang G, Wu S, Wang Y. SRplot: A free online platform for data visualization and graphing. PLoS One. 2023 Nov 9;18(11):e0294236. doi: 10.1371/journal.pone.0294236. PMID: 37943830.
3) FAQs