Volcano plot
Introduction
Similar to volcano, so name it.
Input data instructions
Input data contain 3 columns: the first column is gene name, the second column is log2FC (up: >=0, down <0), the third column is Pvalue/FDR/... . log2FC must not be NA, inf, -inf.
Paper example
Identification of Gene Expression Changes Associated With Uterine Receptivity in Mice Fig 1A.
Writing Skills
Volcano plot of differentially expressed genes between cancer and normal. Red dots represents upregulated genes, blue dots represents downregulated genes, and gray dots represent genes that were not differentially expressed (P < 0.05, |logFC|>1.0).
1) How to plot?
1, Put data in excel according to the example format.
2, Copy and paste into input frame.
3, Input pre-checking button to check input
4, After checking pass, select parameters, submit and download
2) How to cite?
4000+ papers in (Google Scholar)
Tang D, Chen M, Huang X, Zhang G, Zeng L, Zhang G, Wu S, Wang Y. SRplot: A free online platform for data visualization and graphing. PLoS One. 2023 Nov 9;18(11):e0294236. doi: 10.1371/journal.pone.0294236. PMID: 37943830.
3) FAQs